Files in EmmaDann/hexamerModel
Tools for modelling random hexamer primer binding
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/binding_model_functions.r
R/compare_peaks.r
data/CG-BS-pbat-bulk-1xPreamp-human-APKS-handMixOld_lmerged_R1_trimmed_bismark_bt2.deduplicated.srt.mat.gz
data/CG-BS-pbat-bulk-1xPreamp-human-APKS-handMixOld_lmerged_R1_trimmed_bismark_bt2.ptCounts.qualFilt.csv
data/D3R_pt.RData
data/sample_predVSexp_cov_profile.RData
hexamerModel.Rproj
man/add.id.2.Rd
man/add.id.Rd
man/all.hexamers.Rd
man/batch.prob.uniform.Rd
man/build.random.base.Rd
man/build.random.hex.Rd
man/compare.spear.real.Rd
man/compute.keqs.Rd
man/compute.primer.usage.Rd
man/corr.real.Rd
man/correlate.pred.exp.Rd
man/coverage.yield.delta.Rd
man/coverage.yield.single.Rd
man/delta.yield.permutation.Rd
man/epsilon.minimize.chisq.Rd
man/find.rev.pairs.Rd
man/get.avg.methylation.Rd
man/get.range.methylation.Rd
man/hexamerMatrix.Rd
man/is.palindrome.Rd
man/join.pt.data.Rd
man/load.expVSpred.coverage.Rd
man/load.kmer.abundance.Rd
man/load.modelled.deltaG.Rd
man/load.pt.data.Rd
man/loadPtMatrix.Rd
man/make.base.res.bw.Rd
man/make.cum.dist.Rd
man/make.match.df.Rd
man/make.predVSexp.range.Rd
man/make.predVSexp.track.Rd
man/make.random.profile.Rd
man/make_pair_df.Rd
man/make_ppm_of_usage.Rd
man/nice.plotTrack.Rd
man/norm.scale.n.yield.Rd
man/normalize.coverage.Rd
man/plot.batch.accuracy.Rd
man/plot.expVSpred.coverage.track.Rd
man/plot.prediction.Rd
man/predict.coverage.Rd
man/prevalent_nucleotide.Rd
man/primer.prob.Rd
man/random.delta.yield.dist.Rd
man/random.from.even.2.Rd
man/randomize.Rd
man/rev.comp.Rd
man/simulate.primer.pool.Rd
man/smooth.coverage.Rd
man/split.tracks.Rd
man/subsetByRegion.Rd
man/test.add.id.Rd
