Man pages for EngeLab/CIMseq.publication
The CIMseq.publication package reproduces the figures associated with the CIMseq publication
| checkResults | checkResults |
| CIMseq.publication-package | Reproduction of the CIMseq publication figures. |
| classOrder.MGA | classOrder.MGA |
| convertCountsToMatrix | convertCountsToMatrix |
| detectERCCreads | detectERCCreads |
| detectLowQualityCells.ERCCfrac | detectLowQualityCells.ERCCfrac |
| detectLowQualityCells.housekeeping | detectLowQualityCells.housekeeping |
| detectLowQualityCells.totalCounts | detectLowQualityCells.totalCounts |
| detectLowQualityGenes | detectLowQualityGenes |
| detectNonGenes | detectNonGenes |
| filterCountsData | filterCountsData |
| getCountsDataViaLinks | getCountsDataViaLinks |
| getMetadataViaLink | getMetadataViaLink |
| labelSingletsAndMultiplets | labelSingletsAndMultiplets |
| moveGenesToRownames | moveGenesToRownames |
| palette | palette |
| plotPDF | plotPDF |
| plotRmarkdown | plotRmarkdown |
| printResults | printResults |
| removeHTSEQsuffix | removeHTSEQsuffix |
| renameClasses.MGA | renameClasses.MGA |
| renameClasses.SCM | renameClasses.SCM |
| renameMgfpSamples | Rename GFP mouse samples. |
| resultsInPlate | resultsInPlate |
| runSwarmMultiprocess | runSwarmMultiprocess |
| runSwarmUppmax | runSwarmUppmax |
| saveRDA | saveRDA |
| setupPlate | setupPlate |
| seuratToCIMseq | seuratToCIMseq |
| syntheticMultipletsFromCounts | syntheticMultipletsFromCounts |
| syntheticSinglets | syntheticSinglets |
| viewAsPlate | viewAsPlate |
