seuratToCIMseq: seuratToCIMseq
In EngeLab/CIMseq.publication: The CIMseq.publication package reproduces the figures associated with the CIMseq publication
Description
Arguments
Value
Author(s)
Description
Exttracts info from Seurat object and returns CIMseqSinglets and
CIMseqMultiplets objects.
Arguments
seurat.obj
Seurat; A Seurat object.
singlets
matrix; A matrix with singlet counts.
singlet.ercc
matrix; A matrix with singlet ERCC counts.
multiplets
matrix; A matrix with multiplet counts.
multiplets
matrix; A matrix with multiplet ERCC counts.
markers
data.frame; Output from FindAllMarkers
function.
Value
A list with CIMseqSinglets object as the first element and
CIMseqMultiplets object as the second element.
Author(s)
Jason T. Serviss
EngeLab/CIMseq.publication documentation built on Jan. 29, 2020, 10:03 a.m.
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Description Arguments Value Author(s)
Description
Exttracts info from Seurat object and returns CIMseqSinglets and CIMseqMultiplets objects.
Arguments
seurat.obj |
Seurat; A Seurat object. |
singlets |
matrix; A matrix with singlet counts. |
singlet.ercc |
matrix; A matrix with singlet ERCC counts. |
multiplets |
matrix; A matrix with multiplet counts. |
multiplets |
matrix; A matrix with multiplet ERCC counts. |
markers |
data.frame; Output from |
Value
A list with CIMseqSinglets object as the first element and CIMseqMultiplets object as the second element.
Author(s)
Jason T. Serviss
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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