Description Usage Arguments Value Examples
The purpose of the function merge_cluster
is to
define an enlarged window of SNPs which
are in linkage disequilibrium with the target. It replaces the indices of neighbor
clusters with center
, the target cluster index. The neighborhood is defined
according to the parameter k
(see Arguments for more details). Subsequently,
we filter them out for the estimate of the propensity scores.
1 | merge_cluster(clusters, center, k = 3)
|
clusters |
vector of cluster memberships. Typically, the output
of |
center |
the target variant cluster |
k |
vector or integer. if |
The updated cluster membership vector. The cluster indexing is also updated so that the maximum cluster index is equal to the total number of clusters after merging.
1 2 3 | hc <- hclust(dist(USArrests))
clusters <- cutree(hc, k = 10)
merge_cluster(clusters, center=5, k=2)
|
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