calcFreqs: Calculate Allele Frequencies
In EricArcher/ebvSim: Essential Biodiversity Variables Genetic Simulations

Calculate overall and by-strata allele frequencies for input to rmetasim.

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calcFreqs(snps)

alleleProp(mac)

`snps`	data frame of SNP genotypes with first column called 'id', second column called 'stratum' and every two columns thereafter being SNP loci.
`mac`	a vector of numerics giving the count of the minor allele, where 0 = homozygous for reference allele, 1 = heterozygous, 2 = homozygous for minor allele

list of overall ('global') and by-strata ('pop') allele frequencies

EricArcher/ebvSim documentation built on April 9, 2020, 3:39 p.m.