trial.1: Baseline Scenarios - Trial 1

In EricArcher/ebvSim: Essential Biodiversity Variables Genetic Simulations

Description

A data.frame of 96 scenarios for first trial of baseline EBV simulations. All scenarios generate 1000 unlinked SNP loci that have gone through 10 generations of random mating in the rmetasim forward simulator. The mutation rate is set at 1e-4 substitutions per locus per generation. Multiple populations are connected in an island arrangement and diverged 1000 generations in the past. Indivdiual scenarios are then all permutations of:

number of populations	1, 2, 10, 50
effective population size	20, 50, 100, 250, 500, 1000
migration rate	1e-4, 1e-3, 1e-2, 0.1, 0.25

Usage

data(trial.1)

Format

data.frame

EricArcher/ebvSim documentation built on April 9, 2020, 3:39 p.m.