runEBVsim: Run EBV Simulations
In EricArcher/ebvSim: Essential Biodiversity Variables Genetic Simulations

Description Usage Arguments Details Value Author(s)

Run a set of scenarios and replicates to generate genotypes.

runEBVsim(
  label,
  scenarios,
  num.rep,
  google.drive.id = NULL,
  delete.fsc.files = TRUE,
  use.wd = FALSE,
  num.cores = 1,
  fsc.exec = "fsc26"
)

`label`	label used for output files and folders for the run.
`scenarios`	data.frame where each row provides different parameters for each scenario. See `Details` for more information on its structure.
`num.rep`	number of replicates to run for each scenario.
`google.drive.id`	id of root Google Drive to save run to.
`delete.fsc.files`	delete fastsimcoal files when the run is complete?
`use.wd`	use the working directory to save fastsimcoal files? If `FALSE` (default), a temporary folder is used, which is deleted when the R session is closed.
`num.cores`	number of cores to use. Each replciate is allocated to a separate core. If set to 1, then progress is output to the console.
`fsc.exec`	name of fastsimcoal executable.

The scenarios data.frame must have the following columns:

`num.pops`	number of populations.
`Ne`	effective population size of each population.
`num.samples`	number of samples to use.
`mig.rate`	migration rate.
`mig.type`	type of migration matrix: "island" or "stepping.stone".
`dvgnc.time`	divergence time of populations.
`rmetasim.ngen`	number of generations to run `rmetasim` for.