| classifyByHapFreq | Classify By Haplotype Frequency |
| collapseToHaps | Collapse To Haplotypes |
| gtypes2rfDF | Create Sequence Data.Frame |
| gtypesRF | gtype Random Forest |
| makeHaps | Make Haplotypes |
| minVotes | Minimum Votes |
| pctDiag | Extract Percent Diagnosable |
| rfSpeciesID | Random Forest Species ID |
| sequenceRF | Sequence Random Forest |
| sharedHapsPD | Diagnosability Based on Shared Haplotypes |
| uniqueHapBySite | Make Haplotypes |
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