gtypesRF: gtype Random Forest

In EricArcher/geneticRF: Genetic Random Forest

Description

Conduct Random Forest on a gtypes object.

Usage

gtypesRF(g, gene = 1, pairwise = FALSE, conf.level = 0.95, unk = NULL, ...)

Arguments

g	haploid gtypes object with aligned sequences.
gene	number or name of gene to use from multidna @sequences slot.
pairwise	do analysis on all pairwise combinations of strata?
conf.level	confidence level for the binom.test confidence interval
unk	vector of strata to be treated as "unknowns" for prediction with
...	arguments passed to sequenceRF and randomForest.

Value

a list containing a data.frame of summary statistics (smry), and the randomForest object (rf). If pairwise is TRUE then the rf element is a list of randomForest results for each row in smry.

Author(s)

Eric Archer [e-mail]

Examples

library(strataG)
data(dloop.g)

rf.result <- gtypesRF(dloop.g, pairwise = TRUE)

rf.result

EricArcher/geneticRF documentation built on Nov. 15, 2021, 7:22 p.m.