sequenceRF: Sequence Random Forest

In EricArcher/geneticRF: Genetic Random Forest

Description

Conduct Random Forest on stratified data.frame of sequences.

Usage

sequenceRF(
  x,
  replace = FALSE,
  sampsize = NULL,
  train.pct = 0.5,
  min.n = 2,
  nrep = 0,
  conf.level = 0.95,
  ...
)

Arguments

x	data.frame of stratified and aligned sequences from gtypes2rfDF.
replace	sample with replacement? passed to randomForest.
sampsize	number of samples to take from each strata. passed to randomForest. If NULL, value is set to the minumum sample size * train.pct.
train.pct	proportion of strata to use for training if sampsize is NULL.
min.n	minimum sample size to use. If sample size for any strata is less this, this value will be used instead.
nrep	number of rfPermute replicates.
conf.level	confidence level for the binom.test confidence interval
...	arguments passed to randomForest.

Value

a list containing a data.frame of summary statistics (smry), and the rfPermute object (rp).

Author(s)

Eric Archer [e-mail]

EricArcher/geneticRF documentation built on Nov. 15, 2021, 7:22 p.m.