rfSpeciesID: Random Forest Species ID
In EricArcher/geneticRF: Genetic Random Forest
Description
Usage
Arguments
Value
Author(s)
Description
Predict species for unknown samples based on reference samples using Random Forest.
Usage
1
rfSpeciesID(g, ref.strata = NULL, unk.strata = NULL, ...)
Arguments
g
haploid gtypes object with aligned sequences.
ref.strata
a character vector of 2 or more strata in g top use as reference samples.
unk.strata
a character vector of strata representing unknown samples.
...
arguments passed to sequenceRF and randomForest.
Value
a list with the following elements:
pred vector of species predictions.
prob matrix of species assignment probabilities.
rf the randomForest model object.
Author(s)
Eric Archer eric.archer@noaa.gov
EricArcher/geneticRF documentation built on Nov. 15, 2021, 7:22 p.m.
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Description Usage Arguments Value Author(s)
Description
Predict species for unknown samples based on reference samples using Random Forest.
Usage
1 | rfSpeciesID(g, ref.strata = NULL, unk.strata = NULL, ...)
|
Arguments
g |
haploid |
ref.strata |
a character vector of 2 or more strata in |
unk.strata |
a character vector of strata representing unknown samples. |
... |
arguments passed to |
Value
a list with the following elements:
pred | vector of species predictions. |
prob | matrix of species assignment probabilities. |
rf | the randomForest model object. |
Author(s)
Eric Archer eric.archer@noaa.gov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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