seeker_gen_pathway: Seeker the pathway of a gen or genes

In Erickcufe/seekerBio: Seek gen information in databases

Seeker the pathway of a gen or genes

Description

seeker_gene_pathway is a generic function to produce a data.frame with the pathways associated with the input gen, the data.frame contains the ID, name of pathway and p value. The function invokes particular methods wich depend on the class of the first argument

Usage

seeker_gen_pathway(x)

## S3 method for class 'character'
seeker_gen_pathway(x)

## S3 method for class 'factor'
seeker_gen_pathway(x)

## S3 method for class 'data.frame'
seeker_gen_pathway(x)

## Default S3 method:
seeker_gen_pathway(x)

Arguments

x	A gen symbol

Value

A data.frame with the pathways of the gen from reactome.org

NULL

NULL

NULL

NULL

Author(s)

Erick Cuevas Fernández

Heriberto Manuel Rivera

Source

https://reactome.org

Examples

MAPT <- seeker_gen_pathway("MAPT")
df <- data.frame(gen=c("MAPT", "APOE", "MMP12"))
seeker_gen_pathway(df)

Erickcufe/seekerBio documentation built on May 1, 2024, 1:13 a.m.