seeker_haploview: seeker_haploview

In Erickcufe/seekerBio: Seek gen information in databases

seeker_haploview

Description

A function that plot a correlation r2 between all SNPs with a Linkage Desequilibrium upper 0.5

Usage

seeker_haploview(
  SNP,
  population_study = "1000GENOMES:phase_3:MXL",
  window_size = 500,
  d_prime = 0,
  color_select = "cyan"
)

Arguments

SNP	A Single Nucleotide Polymorphism ID ("rs") in character.
population_study	Population for which to compute LD. Default "1000GENOMES:phase_3:MXL"

Value

A correlation r2 plot between all SNPs with a Linkage Desequilibrium upper 0.5

Author(s)

Erick Cuevas Fernández

Heriberto Manuel Rivera

Examples

seeker_haploview("rs7412")

seeker_haploview("rs7412", population_study = "1000GENOMES:phase_3:FIN")

Erickcufe/seekerBio documentation built on May 1, 2024, 1:13 a.m.