Files in EvgeniyaGorobets/PGxVision
Visualize Biomarkers and Pharmacogenomic Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
PGxVision.Rproj
R/data.R
R/dev_setup.R
R/geneSetAnalysis.R
R/manhattanPlot.R
R/networkPlot.R
R/runPGxVision.R
R/utils.R
R/volcanoPlot.R
R/waterfallPlot.R
README.Rmd
README.md
data/BRCA.PDXE.paxlitaxel.response.rda
data/Biomarkers.rda
data/GRCh38.p13.Assembly.rda
data/TestGeneSets.rda
inst/CITATION
inst/extdata/dev_files/1minPitch.txt
inst/extdata/dev_files/References.txt
inst/extdata/dev_files/TODO.txt
inst/extdata/figures/PGxVisionSummary.jpeg
inst/extdata/figures/app-1.png
inst/extdata/figures/app-2.png
inst/extdata/figures/app-3.png
inst/extdata/sample_data/sampleBiomarkers.csv
inst/extdata/sample_data/sampleGenome.csv
inst/extdata/sample_data/sampleTreatmentResponse.csv
inst/shiny-scripts/app.R
man/BRCA.PDXE.paxlitaxel.response.Rd
man/Biomarkers.Rd
man/GRCh38.p13.Assembly.Rd
man/TestGeneSets.Rd
man/buildManhattanPlot.Rd
man/buildNetworkPlot.Rd
man/buildVolcanoPlot.Rd
man/buildWaterfallPlot.Rd
man/computeGeneSetSimilarity.Rd
man/expandGeneSets.Rd
man/geneSetAnalysis.Rd
man/getGeneSets.Rd
man/overlapDistance.Rd
man/runPGxVision.Rd
tests/testthat.R
tests/testthat/test-geneSetAnalysis.R
tests/testthat/test-manhattanPlot.R
tests/testthat/test-networkPlot.R
tests/testthat/test-utils.R
tests/testthat/test-volcanoPlot.R
vignettes/.gitignore
vignettes/Plotting_Biomarkers.Rmd
vignettes/biomarkerInfoBox.PNG
vignettes/geneSetInfoBox.PNG
vignettes/hover-1.png
vignettes/hover-2.png
vignettes/pvalue-1.PNG
vignettes/pvalue-2.PNG
vignettes/shiny-1.PNG
vignettes/shiny-2.PNG
vignettes/side-by-side.PNG
