GRCh38.p13.Assembly: GRCh38.p13 genome assembly
In EvgeniyaGorobets/PGxVision: Visualize Biomarkers and Pharmacogenomic Data
Description
Usage
Format
Source
Description
A dataset containing the characteristics of of the GRCh38.p13 genome
assembly, specifically chromosome names and lengths.
Usage
1
Format
A data frame with 25 rows and 3 variables:
- chrName
the name of the chromosome (all, 1-22, X, Y)
- molecule-type/loc
the molecule type ("chromosome" or "all")
- chrLength
the length of the chromosome (# nucleotides)
Source
Frankish, A., Diekhans, M., Ferreira, A. M., Johnson, R., Jungreis,
I. Loveland, J., Mudge, J. M., Sisu, C., Wright, J., Armstrong, J., Barnes,
I., Berry, A., Bignell, A., Carbonell Sala, S., Chrast, J., Cunningham, F.,
Di Domenico, T., Donaldson, S., Fiddes, I. T., García Girón, C., … Flicek, P.
(2019). GENCODE reference annotation for the human and mouse genomes.
_Nucleic acids research, 47_(D1), D766–D773.
https://doi.org/10.1093/nar/gky955
EvgeniyaGorobets/PGxVision documentation built on Dec. 17, 2021, 7:26 p.m.
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Description Usage Format Source
Description
A dataset containing the characteristics of of the GRCh38.p13 genome assembly, specifically chromosome names and lengths.
Usage
1 |
Format
A data frame with 25 rows and 3 variables:
- chrName
the name of the chromosome (all, 1-22, X, Y)
- molecule-type/loc
the molecule type ("chromosome" or "all")
- chrLength
the length of the chromosome (# nucleotides)
Source
Frankish, A., Diekhans, M., Ferreira, A. M., Johnson, R., Jungreis, I. Loveland, J., Mudge, J. M., Sisu, C., Wright, J., Armstrong, J., Barnes, I., Berry, A., Bignell, A., Carbonell Sala, S., Chrast, J., Cunningham, F., Di Domenico, T., Donaldson, S., Fiddes, I. T., García Girón, C., … Flicek, P. (2019). GENCODE reference annotation for the human and mouse genomes. _Nucleic acids research, 47_(D1), D766–D773. https://doi.org/10.1093/nar/gky955
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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