runPGxVision: Launch the PGxVision Shiny app

In EvgeniyaGorobets/PGxVision: Visualize Biomarkers and Pharmacogenomic Data

Description

Launches a shinydashboard that lets users interact with PGxVision through UI elements. The app allows users to upload biomarker, drug sensitivity, and genome files, and will plot the data in the files. Users can dynamically rerender plots by choosing different experiments (tissues, compounds, mDataTypes) and can select points on plots to see more information about the gene. Users can also run gene set analysis on any gene in the dataset, and the app will provide an interactive network plot. Users can click on nodes to see more information about the gene set. The code has been placed in ./inst/shiny-scripts/app.R.

Usage

runPGxVision()

Value

No return value; open up a shiny page

Examples

## Not run: 
runPGxVision()

## End(Not run)

EvgeniyaGorobets/PGxVision documentation built on Dec. 17, 2021, 7:26 p.m.