Man pages for EvgeniyaGorobets/PGxVision
Visualize Biomarkers and Pharmacogenomic Data
| Biomarkers | Drug sensitivity data for genes in the GRCh38.p13 genome... |
| BRCA.PDXE.paxlitaxel.response | Paxlitaxel response in BRCA PDXs |
| buildManhattanPlot | Build a Manhattan plot of biomarkers |
| buildNetworkPlot | Build a network plot of gene sets |
| buildVolcanoPlot | Build a volcano plot of biomarkers |
| buildWaterfallPlot | Build a waterfall plot of drug response |
| computeGeneSetSimilarity | Compute the similarity/overlap between gene sets |
| expandGeneSets | Retrieve genes in each gene set |
| geneSetAnalysis | Perform a gene set analysis on a gene |
| getGeneSets | Get gene set info based on a query gene |
| GRCh38.p13.Assembly | GRCh38.p13 genome assembly |
| overlapDistance | Helper function for computeGeneSetSimilarity |
| runPGxVision | Launch the PGxVision Shiny app |
| TestGeneSets | A set of 10 'GO cellular compartment' gene sets |
