multi_norm_and_annot: Normalization and annotation of microarray data from many...

In EwaMarek/FindReference: Find reference genes or miRNAs basing on microarray data.

Description

multi_norm_and_annot function normalizes and annotates data from many microarray experiments.

Usage

multi_norm_and_annot(dataList, ExpInfoTable)

Arguments

dataList	A list of objects of class marrayRaw, EListRaw, AffyBatch, ExonFeatureSet or list (see details) with raw expression data.
platformVector	A character vector indicating experiments' platform (could be 'Affymetrix' or 'Agilent').

Details

An element of a dataList (first argument) could be also a list due to make it possible to process data from an experiment where there are few array types within one platform (Affymetrix or Agilent). For details about normalization and annotation used in multi_norm_and_annot see norm_and_annot_by_platform help.

Value

A list of expression matrices with normalized and annotated expression values.

See Also

norm_and_annot_by_platform

Examples

## Not run: 
### download, load, normalize and annotate data from ArrayExpress

# download
to_download = c("E-GEOD-21066", "E-MTAB-966")
data = downloadAE(to_download, getwd())

# load
platforms = c("Affymetrix", "Agilent")
loaded_experiments = load_multi_data(data, platforms)

# process
processed_data = multi_norm_and_annot(loaded_experiments[[1]], platforms)

## End(Not run)

EwaMarek/FindReference documentation built on May 30, 2019, 3:40 p.m.