DEresult: extract log fold change information from a list of...

In FDUguchunhui/autoHeatmap: heatmaplot

Description

extract log fold change information from a list of DESeqResults, return a tibble

Usage

DEresult(res_list, gene_list = NULL, col_name = NULL, ...)

Arguments

res_list	a list of DESeqResults, must have the same length
gene_list	a list of gene that you want to subset. If you don't provide this, by default this function will return all the gene from DESeqResults
col_name	a character vector that gives column name of the output
...	other parameters can be used in res_subgroup function reg_dir gives which regulation direction you want to subset you gene three options: all – up and down up – only up regulated down – only down regulated default is all alpha the significant level for adjusted P-value, default is 1, i.e. no alpha requirement reg_LFC reg gives the regulation level change in log2 fold change in absolute value default is 0, i.e. no LFC requirement

FDUguchunhui/autoHeatmap documentation built on Jan. 17, 2020, 1:44 a.m.