res_subgroup: subset the result of a differential expression analysis
In FDUguchunhui/autoHeatmap: heatmaplot
Description
subset the result of a differential expression analysis
Usage
1
res_subgroup(res, alpha = 0.1, reg_LFC = 1, reg_dir = "all")
Arguments
res
an obj from DEseq2.result function
alpha
the significant level for adjusted P-value
reg_LFC
reg gives the regulation level change in log2 fold change in absolute value
reg_dir
gives which regulation direction you want to subset you gene
three options: all – up and down
up – only up regulated
down – only down regulated
FDUguchunhui/autoHeatmap documentation built on Jan. 17, 2020, 1:44 a.m.
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Description
subset the result of a differential expression analysis
Usage
1 | res_subgroup(res, alpha = 0.1, reg_LFC = 1, reg_dir = "all")
|
Arguments
res |
an obj from DEseq2.result function |
alpha |
the significant level for adjusted P-value |
reg_LFC |
reg gives the regulation level change in log2 fold change in absolute value |
reg_dir |
gives which regulation direction you want to subset you gene three options: all – up and down up – only up regulated down – only down regulated |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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