hmplot: plot heatmap by integrate data from DESeq and enrichment...

Description Usage Arguments Value

View source: R/get_pathway_namelist.R

Description

more information

Usage

1
hmplot(count_matrix, enrichment, file = "heatmap.pdf", ...)

Arguments

count_matrix

the RNA-seq expression level count matrix or intensity matrix from microarray

file

the destination and name you want to save your heatmap, by default is the

...

other parameters used in pheatmap your current work directory, the default name is heatmap.pdf

enrichment_xlsx

the post-processed Excel file from enrichment analysis

Value

output a pdf file of heatmaps of all the pathways in the enrichment_xlsx


FDUguchunhui/autoHeatmap documentation built on Jan. 17, 2020, 1:44 a.m.