quantF_Fo: A function used to quantify the response in the region of...
In FafferMcgee/calcium-analysis:
Description
It normalizes the intensity data during stimulus window by calculating an average Fo before stimulus, and then dviding the fluorescence values in this window by the background Fo.
Usage
1
quantF_Fo(data, conditions, averageWindow)
Details
Normalizing first by an averaged background (Fo) right before stimulus corrects for photobleaching/drift.
Inputs:
Data = Dataframe containing fluorescence intensity data
Conditions = vectory of integers indicating when
averageWindow = the window to use prior to stimulus for calculating Fo
i = odd index of conditions (corresponds of start of new condition)
j = index of response
FafferMcgee/calcium-analysis documentation built on Sept. 3, 2020, 12:07 a.m.
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Description
It normalizes the intensity data during stimulus window by calculating an average Fo before stimulus, and then dviding the fluorescence values in this window by the background Fo.
Usage
1 | quantF_Fo(data, conditions, averageWindow)
|
Details
Normalizing first by an averaged background (Fo) right before stimulus corrects for photobleaching/drift.
Inputs: Data = Dataframe containing fluorescence intensity data Conditions = vectory of integers indicating when averageWindow = the window to use prior to stimulus for calculating Fo
i = odd index of conditions (corresponds of start of new condition) j = index of response
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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