Consensus_Differential_Expression: Consensus_Differential_Expression

Description Usage Arguments Value Examples

View source: R/DEA_Consensus_Differential_Expression_Analysis.R

Description

Consensus_Differential_Expression

Usage

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Consensus_Differential_Expression(
  Exp,
  groups,
  methods = "ALL",
  adj.method = "BH",
  fearture.name = "gene",
  center.fun = "mean"
)

Arguments

Exp

data.frame or matrix with rownames represent samples, colnames represent features like proteins or genes.

groups

factor vector indicates group information. In two-way anova, groups are a data.frame, each column indicate one group factor.

type

"one-way" or "two-way" anova.

Value

Consensus_Differential_Expression One list including all results of Differential Expression analysis \n DEA_ANOVA Anova result with pairwised comparation.

Examples

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res.anova <- DEA_ANOVA(iris[-5], groups = iris$Species)
res.ttest <- DEA_t.test(exp, groups)

FanqianYin/omicstoolkits documentation built on Jan. 3, 2022, 5:57 p.m.