normalize_sample_based: Sample-based normalization Normalise data by sample-based...

In FanqianYin/omicstoolkits: Integrated bioinformatics toolkits for quantitative omics data analysis

Description

Sample-based normalization Normalise data by sample-based scaling factor, like sum or mean of sample.

Usage

normalize_sample_based(expData, design, method, na = 0)

Arguments

expData	data.frame: row as sample, colum as metabolite(or features/variables)
design	data.frame, including 4 columns: "sample", "batch", "class", "order" (run order). QC sample as "QC" in column "class".
method	including: "tic", "median", "mean", "range", "mad", "MSTUS".
na	only take 0 as missing value, not NA.

FanqianYin/omicstoolkits documentation built on Jan. 3, 2022, 5:57 p.m.