exportClusters: Export clusters as BED track

In FedericoComoglio/wavClusteR: Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data

Description

Export clusters as BED track, compatible with the UCSC genome browser

Usage

exportClusters(clusters, filename = 'wavClusters.bed', trackname =
'wavClusters', description = 'wavClusters')

Arguments

clusters	GRanges object containing individual clusters as identified by the filterClusters function
filename	A character defining the BED file name. Default to "wavClusters.bed"
trackname	A character defining the track.name of the BED file. Default to "wavClusters"
description	A character defining the description of the BED file. Default to "wavClusters"

Value

A BED file of the exported GRanges object

Note

Clusters are color coded according to their strand information (red for the plus strand, blue for the minus strand).

Author(s)

Federico Comoglio

See Also

filterClusters

FedericoComoglio/wavClusteR documentation built on Oct. 29, 2020, 2:44 p.m.