exportSequences: Export cluster sequences for motif search analysis
In FedericoComoglio/wavClusteR: Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Export cluster sequences for motif search analysis (FASTA format), e.g.
using MEME-ChIP
Usage
1
exportSequences(clusters, filename = 'wavClusters.fasta')
Arguments
clusters
GRanges object containing individual clusters as identified
by the filterClusters function
filename
A character defining the BED file name. Default to
"wavClusters.fasta"
Value
A FASTA file containing the cluster sequences
Author(s)
Federico Comoglio
See Also
FedericoComoglio/wavClusteR documentation built on Oct. 29, 2020, 2:44 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
Export cluster sequences for motif search analysis (FASTA format), e.g. using MEME-ChIP
Usage
1 | exportSequences(clusters, filename = 'wavClusters.fasta')
|
Arguments
clusters |
GRanges object containing individual clusters as identified by the filterClusters function |
filename |
A character defining the BED file name. Default to "wavClusters.fasta" |
Value
A FASTA file containing the cluster sequences
Author(s)
Federico Comoglio
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.