exportHighConfSub: Export high-confidence substitutions as BED track

Description Usage Arguments Value Note Author(s) See Also

View source: R/export.R

Description

Export high-confidence substitutions as BED track, compatible with the UCSC genome browser

Usage

1
2
exportHighConfSub(highConfSub, filename = 'highConfSub.bed',
trackname = 'highConfSub', description = 'highConfSub')

Arguments

highConfSub

GRanges object containing high-confidence substitution sites as returned by the getHighConfSub function

filename

A character defining the BED file name. Default to "wavClusters.bed"

trackname

A character defining the track.name of the BED file. Default to "wavClusters"

description

A character defining the description of the BED file. Default to "wavClusters"

Value

A BED file of the exported GRanges object

Note

Substitutions are color coded according to their strand information (red for the plus strand, blue for the minus strand).

Author(s)

Federico Comoglio

See Also

getHighConfSub


FedericoComoglio/wavClusteR documentation built on Oct. 29, 2020, 2:44 p.m.