Files in FelixErnst/Modstrings
Working with modified nucleotide sequences
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc-devel.yml
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllGenerics.R
R/Modstrings-MaskedModString.R
R/Modstrings-ModString.R
R/Modstrings-ModStringCodec-data.R
R/Modstrings-ModStringCodec.R
R/Modstrings-ModStringSet-io.R
R/Modstrings-ModStringSet.R
R/Modstrings-ModStringSetList.R
R/Modstrings-ModStringViews.R
R/Modstrings-QualityScaledModStringSet.R
R/Modstrings-external-C-calls.R
R/Modstrings-external-functions.R
R/Modstrings-letterFrequency.R
R/Modstrings-modifyNucleotide.R
R/Modstrings-replaceLetterAt.R
R/Modstrings-sanitize.R
R/Modstrings-separate.R
R/Modstrings-seqtype.R
R/Modstrings.R
R/datasets.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
codecov.yml
data/MOD_RNA_DICT_MODOMICS.rda
data/MOD_RNA_DICT_TRNADB.rda
data/modsDNA.rda
data/modsRNA.rda
inst/CITATION
inst/extdata/DNAmod_modifications.txt
inst/extdata/Mod_DNA_codes.txt
inst/extdata/Mod_RNA_codes.txt
inst/extdata/modomics_modifications.txt
inst/extdata/tRNAdb_modifications.txt
inst/extdata/test.fasta
man/MaskedModString.Rd
man/ModDNAString.Rd
man/ModRNAString.Rd
man/ModString.Rd
man/ModStringSet-io.Rd
man/ModStringSet.Rd
man/ModStringSetList.Rd
man/ModStringViews.Rd
man/Modstrings-internals.Rd
man/Modstrings.Rd
man/QualityScaledModStringSet.Rd
man/alphabet.Rd
man/letterFrequency.Rd
man/modifyNucleotides.Rd
man/replaceLetterAt.Rd
man/sanitizeInput.Rd
man/separate.Rd
tests/testthat.R
tests/testthat/test-0ModString-Codec.R
tests/testthat/test-0ModString.R
tests/testthat/test-0QualityModString.R
tests/testthat/test-1ModString-io.R
tests/testthat/test-1seq-features.R
tests/testthat/test-2comparison.R
tests/testthat/test-2matching.R
tests/testthat/test-3seq-changes.R
tests/testthat/test-4separate.R
tests/testthat/test-5MaskedModString.R
tests/testthat/test-5sanitize.R
tests/testthat/test_DNA_codes.txt
vignettes/ModDNAString-alphabet.Rmd
vignettes/ModRNAString-alphabet.Rmd
vignettes/Modstrings.Rmd
vignettes/references.bib
