Modstrings-internals: Modstrings internals

In FelixErnst/Modstrings: Working with modified nucleotide sequences

Modstrings internals

Description

Analog to Biostrings there are a few functions, which should only be used internally. Otherwise take care.

Usage

## S4 method for signature 'ModDNAString'
seqtype(x)

## S4 method for signature 'ModRNAString'
seqtype(x)

## S4 replacement method for signature 'ModString'
seqtype(x) <- value

## S4 method for signature 'ModString'
XString(seqtype, x, start = NA, end = NA, width = NA)

## S4 replacement method for signature 'ModStringSet'
seqtype(x) <- value

## S4 method for signature 'ModStringSet'
XStringSet(seqtype, x, start = NA, end = NA, width = NA, use.names = TRUE)

data(modsRNA)

data(modsDNA)

data(MOD_RNA_DICT_MODOMICS)

data(MOD_RNA_DICT_TRNADB)

Arguments

seqtype, x, start, end, width, use.names, value

used internally

Format

An object of class DFrame with 162 rows and 9 columns.

An object of class DFrame with 47 rows and 5 columns.

An object of class DFrame with 170 rows and 3 columns.

An object of class DFrame with 60 rows and 3 columns.

Value

a XString* object

FelixErnst/Modstrings documentation built on April 1, 2024, 2:21 p.m.