MaskedModString: MaskedModString objects

In FelixErnst/Modstrings: Working with modified nucleotide sequences

MaskedModString objects

Description

The functions are implemented as defined in the Biostrings package. Have a look the MaskedXString class.

Usage

## S4 method for signature 'MaskedModString'
seqtype(x)

Arguments

x	a ModString object.

Value

a MaskedModString object.

Examples

# Mask positions
mask <- Mask(mask.width=5, start=c(2), width=c(3))
mr <- ModRNAString("ACGU7")
mr

masks(mr) <- mask
mr

# Invert masks
mr <- gaps(mr)
mr

# Drop the mask
masks(mr) <- NULL
mr

FelixErnst/Modstrings documentation built on April 1, 2024, 2:21 p.m.