alphabet | Base information for sequence characters of nucleotide... |
letterFrequency | Calculate the frequency of letters in nucleotide sequence... |
MaskedModString | MaskedModString objects |
ModDNAString | ModDNAString class |
modifyNucleotides | Modifying nucleotides in a nucleotide sequence (or set of... |
ModRNAString | ModDNAString class |
ModString | ModString objects |
Modstrings | Modstrings: implementation of Biostrings to work with... |
ModStringSet | ModStringSet objects |
ModStringSet-io | Read/write an ModStringSet object from/to a file |
ModStringSetList | ModStringSetList |
Modstrings-internals | Modstrings internals |
ModStringViews | The ModStringViews class extending the XStringViews class |
QualityScaledModStringSet | QualityScaledModDNAStringSet and QualityScaledModRNAStringSet... |
replaceLetterAt | Replacing letters in a nucleotide sequence (or set of... |
sanitizeInput | Sanitize input strings for use with ModString classes |
separate | Separating and combining a modification information into/from... |
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