importTaxpasta: Import taxpasta-specific BIOM results to...

In FelixErnst/mia: Microbiome analysis

Import taxpasta-specific BIOM results to TreeSummarizedExperiment

Description

Import taxpasta-specific BIOM results to TreeSummarizedExperiment

Usage

importTaxpasta(file)

Arguments

file	A single character value specifying the file path to a BIOM file.

Details

importTaxpasta imports data that is returned from TAXonomic Profile Aggregation and STAndardisation (taxpasta) pipeline. See more information on taxpasta from taxpasta documentation.

Value

A TreeSummarizedExperiment object.

See Also

importBIOM convertFromBIOM

Examples

## Not run: 
# File path to BIOM file
file_path <- system.file("extdata", "complete.biom", package = "mia")
# Import BIOM as TreeSE
tse <- importTaxpasta(file_path)

## End(Not run)

FelixErnst/mia documentation built on July 15, 2024, 9:21 p.m.