mia-package | R Documentation |
mia
Package.mia
implements tools for microbiome analysis based on the
SummarizedExperiment
, SingleCellExperiment
and
TreeSummarizedExperiment
infrastructure. Data wrangling and analysis
in the context of taxonomic data is the main scope. Additional functions for
common task are implemented such as community indices calculation and
summarization.
Maintainer: Tuomas Borman tuomas.v.borman@utu.fi (ORCID)
Authors:
Felix G.M. Ernst felix.gm.ernst@outlook.com (ORCID)
Sudarshan A. Shetty sudarshanshetty9@gmail.com (ORCID)
Leo Lahti leo.lahti@iki.fi (ORCID)
Other contributors:
Yang Cao [contributor]
Nathan D. Olson nolson@nist.gov [contributor]
Levi Waldron [contributor]
Marcel Ramos [contributor]
Héctor Corrada Bravo [contributor]
Jayaram Kancherla [contributor]
Domenick Braccia dbraccia@umd.edu [contributor]
Basil Courbayre [contributor]
Muluh Muluh [contributor]
Giulio Benedetti [contributor]
Moritz Emanuel Beber moritz.beber@igdore.org (ORCID) [contributor]
Nitesh Turaga [contributor]
Chouaib Benchraka [contributor]
Akewak Jeba [contributor]
Himmi Lindgren [contributor]
Noah De Gunst [contributor]
Théotime Pralas [contributor]
Shadman Ishraq [contributor]
Eineje Ameh [contributor]
Artur Sannikov [contributor]
Hervé Pagès [contributor]
Rajesh Shigdel [contributor]
Katariina Pärnänen [contributor]
Pande Erawijantari [contributor]
Danielle Callan [contributor]
TreeSummarizedExperiment
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