mia-package: 'mia' Package.

mia-packageR Documentation

mia Package.

Description

mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.

Author(s)

Maintainer: Tuomas Borman tuomas.v.borman@utu.fi (ORCID)

Authors:

Other contributors:

  • Yang Cao [contributor]

  • Nathan D. Olson nolson@nist.gov [contributor]

  • Levi Waldron [contributor]

  • Marcel Ramos [contributor]

  • Héctor Corrada Bravo [contributor]

  • Jayaram Kancherla [contributor]

  • Domenick Braccia dbraccia@umd.edu [contributor]

  • Basil Courbayre [contributor]

  • Muluh Muluh [contributor]

  • Giulio Benedetti [contributor]

  • Moritz Emanuel Beber moritz.beber@igdore.org (ORCID) [contributor]

  • Nitesh Turaga [contributor]

  • Chouaib Benchraka [contributor]

  • Akewak Jeba [contributor]

  • Himmi Lindgren [contributor]

  • Noah De Gunst [contributor]

  • Théotime Pralas [contributor]

  • Shadman Ishraq [contributor]

  • Eineje Ameh [contributor]

  • Artur Sannikov [contributor]

  • Hervé Pagès [contributor]

  • Rajesh Shigdel [contributor]

  • Katariina Pärnänen [contributor]

  • Pande Erawijantari [contributor]

  • Danielle Callan [contributor]

See Also

TreeSummarizedExperiment


FelixErnst/mia documentation built on Nov. 3, 2024, 2:51 a.m.