peerj13075: Skin microbial profiles 58 genetically unrelated individuals

In FelixErnst/mia: Microbiome analysis

Skin microbial profiles 58 genetically unrelated individuals

Description

peerj13075 includes skin microbial profiles of 58 volunteers with multiple factors. 16S r-RNA sequencing of V3-V4 regions was done to generate millions of read using illumina platform. A standard bioinformatic and statistical analysis done to explore skin bacterial diversity and its association with age, diet, geographical locations. The authors investigated significant association of skin microbiota with individual’s geographical location.

Usage

data(peerj13075)

Format

A TreeSummarizedExperiment with 674 features and 58 samples. The rowData contains taxonomic information at kingdom, phylum, class, order, family and genus level. The colData includes:

Sample

sample ID

Geographical_location

city where participant lives (Ahmednagar, Pune and Nashik)

Gender

participant's gender (Male or Female)

Age

participant's age group (Middle_age, Adult and Elderly)

Diet

participant's diet (Veg or Mixed)

Author(s)

Potbhare, R., et al.

References

Potbhare, R., RaviKumar, A., Munukka, E., Lahti, L., & Ashma, R. (2022). Skin microbiota diversity among genetically unrelated individuals of Indian origin. PeerJ, 10, e13075. https://doi.org/10.7717/peerj.13075 Supplemental information includes OTU table and taxonomy table publicly-accessible from: https://www.doi.org/10.7717/peerj.13075/supp-1 https://www.doi.org/10.7717/peerj.13075/supp-2

See Also

mia-datasets

FelixErnst/mia documentation built on Nov. 18, 2024, 5:02 a.m.