Files in Fraternalilab/BrepConvert
BrepConvert: R package for gene conversion analysis of B cell repertoire
BrepConvert.Rproj
BrepConvert_logo.png
DESCRIPTION
LICENSE
NAMESPACE
R/AA.R
R/ScanGeneConversion.R
R/batchConvertAnalysis.R
R/blat.R
R/doBlat.R
R/formatBlat.R
R/getCoverage.R
R/getEditDistance.R
R/getIdenticalLength.R
R/getTopBlat.R
R/mergeHits.R
R/plotting.R
README.md
example/IGHV_functional_gapped.fasta
example/IGHV_pseudogenes_gapped.fasta
example/MallabyEtAl_example_set.fasta
example/MallabyEtAl_example_set_results.csv
inst/exe/blat
inst/extdata/IMGT_Chicken_IGLV_F.fasta
inst/extdata/IMGT_Chicken_IGLV_P.fasta
inst/extdata/pmid10201919_vquest.tsv
inst/extdata/pmid3100050_vquest.tsv
man/ScanGeneConversion.Rd
man/adjustBroadPos.Rd
man/batchConvertAnalysis.Rd
man/blat.Rd
man/doBlat.Rd
man/formatBlat.Rd
man/getAAGeneConversion.Rd
man/getBroadCDNA.Rd
man/getCoverage.Rd
man/getEditDistance.Rd
man/getIdenticalLength.Rd
man/getNarrowCDNA.Rd
man/getTopBlat.Rd
man/mergeHits.Rd
man/plotCoverage.Rd
man/plotEvents.Rd
vignettes/BrepConvert.R
vignettes/BrepConvert.Rmd
vignettes/BrepConvert.html
vignettes/bibliography.bib
vignettes/nar-webserver-issue.csl
vignettes/pmid3100050_Fig9.png
