getEditDistance: Function to calculate Levenshtein distance between defined...
In Fraternalilab/BrepConvert: BrepConvert: R package for gene conversion analysis of B cell repertoire
View source: R/getEditDistance.R
getEditDistance R Documentation
Function to calculate Levenshtein distance between defined sequence stretches of two longer sequences.
Description
Function to calculate Levenshtein distance between defined sequence stretches of two longer sequences.
Usage
getEditDistance(hits, query, subject, method = "levenshtein")
Arguments
hits
data.frame storing potential hits (donor pseudogenes) that explain a given gene conversion event. Each row corresponds to one definition using a given pseudogene. The boundaries of the pseudogene sequence and the observed repertorie sequence are given.
query
character, the full-length V gene sequence of the observed repertoire sequence for which gene conversion events are annotated.
subject
DNAStringSet object containing a set of pseudogene DNA sequences.
method
the method used to calculate string distances (default: "levenshtein")
Fraternalilab/BrepConvert documentation built on Oct. 14, 2022, 5:54 p.m.
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View source: R/getEditDistance.R
| getEditDistance | R Documentation |
Function to calculate Levenshtein distance between defined sequence stretches of two longer sequences.
Description
Function to calculate Levenshtein distance between defined sequence stretches of two longer sequences.
Usage
getEditDistance(hits, query, subject, method = "levenshtein")
Arguments
hits |
data.frame storing potential hits (donor pseudogenes) that explain a given gene conversion event. Each row corresponds to one definition using a given pseudogene. The boundaries of the pseudogene sequence and the observed repertorie sequence are given. |
query |
character, the full-length V gene sequence of the observed repertoire sequence for which gene conversion events are annotated. |
subject |
|
method |
the method used to calculate string distances (default: "levenshtein") |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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