getIdenticalLength: Function to calculate the length of identical sequence...
In Fraternalilab/BrepConvert: BrepConvert: R package for gene conversion analysis of B cell repertoire
View source: R/getIdenticalLength.R
getIdenticalLength R Documentation
Function to calculate the length of identical sequence stretch 5' or 3' of given boundaries of sequence stretches from two longer sequences.
Description
Function to calculate the length of identical sequence stretch 5' or 3' of given boundaries of sequence stretches from two longer sequences.
Usage
getIdenticalLength(hits, subject, query, type)
Arguments
hits
data.frame storing potential hits (donor pseudogenes) that explain a given gene conversion event. Each row corresponds to one definition using a given pseudogene. The boundaries of the pseudogene sequence and the observed repertorie sequence are given.
subject
DNAStringSet object containing a set of pseudogene DNA sequences.
query
character, the full-length V gene sequence of the observed repertoire sequence for which gene conversion events are annotated.
type
character, either '5p' or '3p' denoting the direction for which the identical sequence stretches are considered.
Fraternalilab/BrepConvert documentation built on Oct. 14, 2022, 5:54 p.m.
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View source: R/getIdenticalLength.R
| getIdenticalLength | R Documentation |
Function to calculate the length of identical sequence stretch 5' or 3' of given boundaries of sequence stretches from two longer sequences.
Description
Function to calculate the length of identical sequence stretch 5' or 3' of given boundaries of sequence stretches from two longer sequences.
Usage
getIdenticalLength(hits, subject, query, type)
Arguments
hits |
data.frame storing potential hits (donor pseudogenes) that explain a given gene conversion event. Each row corresponds to one definition using a given pseudogene. The boundaries of the pseudogene sequence and the observed repertorie sequence are given. |
subject |
|
query |
character, the full-length V gene sequence of the observed repertoire sequence for which gene conversion events are annotated. |
type |
character, either '5p' or '3p' denoting the direction for which the identical sequence stretches are considered. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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