plotRN_phaseProjection: Plot Phase Space Projection

In FredHasselman/casnet: A Toolbox for Studying Complex Adaptive Systems and Networks

Plot Phase Space Projection

Description

2D umap projection of multidimensional Phase Space. Categories "No recurrence" and "Other" are removed.

Usage

plotRN_phaseProjection(
  RNdist,
  phaseOutput,
  epochColours = NULL,
  showEpochLegend = TRUE,
  epochLabel = "Phase",
  excludeOther = TRUE,
  excludeNorec = TRUE
)

Arguments

RNdist	A distance matrix (unthresholded) created with rn or rp
phaseOutput	Output from function rn_phases
excludeOther	Exclude the default Phase "Other"
excludeNorec	Exclude the default Phase "No recurrence"
PhaseOut	Output from function rn_phases based on the thresholded matrix in RNdist

Value

Dataframe with coordinates

FredHasselman/casnet documentation built on Jan. 6, 2025, 3:18 a.m.