README.md

In GOVS-pack/GOVS: Genome optimization via virtual simulation

GOVS

Overview

GOVS (Genome Optimization via Virtual Simulation) is an integrative R package for maize breeding that streamlines genome optimization via virtual simulation achieve guidance of lines selection and population development. GOVS describes a promising strategy that can help breeders to select materials in a purposeful and directional manner, with the purpose of enabling breeders to combine others technologies with rapidly genetic gain benefit by genome optimization.

Overview of GOVS

Installation

1. Github install

## install dependencies and GOVS
install.packages(c("ggplot2","rrBLUP","lsmeans","readr","pbapply","pheatmap","emmeans"))
require("devtools")
install_github("GOVS-pack/GOVS") 
## if you want build vignette in GOVS 
install_github("GOVS-pack/GOVS",build_vignettes = TRUE)

1. Download .tar.gz package and install

## install dependencies and GOVS with bult-in vignette
install.packages(c("ggplot2","rrBLUP","lsmeans","readr","pbapply","pheatmap","emmeans"))
install.packages("DownloadPath/GOVS_1.0.tar.gz")

Links

• GOVS Homepage: https://govs-pack.github.io/
• QuickStart: https://govs-pack.github.io/QuickStart/
• Tutorial: https://govs-pack.github.io/Tutorial/
• Reference Manual: https://github.com/GOVS-pack/GOVS/blob/master/GOVS-Reference-Manual.pdf
• Download: https://github.com/GOVS-pack/GOVS/raw/master/GOVS_1.0.tar.gz

GOVS-pack/GOVS documentation built on Oct. 9, 2022, 8:29 a.m.