IBDTestData: Example data for IBD map construction

In GOVS-pack/GOVS: Genome optimization via virtual simulation

Example data for IBD map construction

Description

Example data for IBD map construction

Usage

data("IBDTestData")

Format

A list:

snpParents

a matrix regarding genotype of parents.

markerInfo

a matrix or dataframe with four cols regarding information of markers.

snpProgeny

a character vector involes genotypes of progeny.

posGenetic

a numeric vector regarding genetic positions.

Details

Details see:
Liu H J, Wang X, Xiao Y, et al. CUBIC: an atlas of genetic architecture promises directed maize improvement[J]. Genome biology, 2020, 21(1): 1-17.

https://github.com/heroalone/HMM-IBD

Source

Liu H J, Wang X, Xiao Y, et al. CUBIC: an atlas of genetic architecture promises directed maize improvement[J]. Genome biology, 2020, 21(1): 1-17.

https://github.com/heroalone/HMM-IBD

References

Liu H J, Wang X, Xiao Y, et al. CUBIC: an atlas of genetic architecture promises directed maize improvement[J]. Genome biology, 2020, 21(1): 1-17.

https://github.com/heroalone/HMM-IBD

Examples

  data(IBDTestData)

GOVS-pack/GOVS documentation built on Oct. 9, 2022, 8:29 a.m.