Res: An example result of our own method.

In GaoLabXDU/CEPICS: CEPICS: a comparison and evaluation platform for integration methods in cancer subtyping

Description

CEPICS allows users to upload their own subtyping results so that it is very convenient for researchers to evaluate and compare their own methods to the state-of-the-art ones. "Res" is an example result of our own method which is a list with following elements:

• data: a list with the following elements:

  • data: a sample-sample similarity matrix. We calculate the Euclid distance between every two samples Then we divide 1 by the distance matrix and scaled it by the maximum of the matrix. Finally, we set the diagonal of the matrix to 1.

  • cluster: the cluster result matrix. The n-th row is the cluster label of each sample when cluster samples into (n+1) clusters.

• name: "Ours", the name of our own method.

• time: 66, the time consumption of our own method.

Usage

Res

Format

An object of class list of length 3.

Details

Res dataset can be only used in funtion CEPICS.

See Also

CEPICS

Examples

data(Res)

#we get the similarity matrix by following code:
data("COAD_miRNA")
sim=dist(t(COAD_miRNA))
sim=as.matrix(1/sim)
sim=sim/max(sim)
sim=sim+diag(1,nrow(sim),ncol(sim))

GaoLabXDU/CEPICS documentation built on June 9, 2020, 2:31 a.m.