read.sp.csv2: [!v0.1] Read spectroscopic CSV (comma separated values) file

In GegznaV/spHelper: Extension of Package `hyperSpec` and Various Convenience Functions

[!v0.1] Read spectroscopic CSV (comma separated values) file

Description

[!v0.1] Read spectroscopic CSV (comma separated values) file

Usage

read.sp.csv2(
  file,
  parse_filename = NULL,
  ylab = "Absorbance",
  xlab = "Wavelength, nm",
  ...
)

Arguments

file	The name of the file with specroscopic data.
parse_filename	(function | string | NULL) Either a function that parses string of filename and extracts relevant information, or a regular expression to be used to parse file name and extract relevant information, or NULL.
ylab	(string) Label for y (intensity) axis. Defaut is "I, a.u.".
xlab	(string | NULL) Label for x (wavelength) axis. If NULL (defaut) - the label is selected automatically.
...	parameters to be passed to read.csv.

Details

In read.sp.csv the default decimal symbol is dot (.).
In read.sp.csv2 - comma (,).

Value

A hyperSpec object with technical and spectroscopic information from file file.

Author(s)

Vilmantas Gegzna

See Also

Other spHelper functions for spectroscopy and hyperSpec: IQR_outliers(), binning(), file, gapDer(), hy2mat(), hyAdd_Label_wl(), hyAdd_Labels_PAP_PD_2014(), hyAdd_Labels_TD2009(), hyAdd(), hyDrop_NA(), hyGet_palette(), hyRm_palette(), mad_outliers(), mean_Nsd(), median_Nmad(), plot_hyPalette(), prepare_PAP_RK_2014__MATLAB_failui(), read.OOIBase32(), read.OceanView.header(), read.OceanView(), read3csv2hy(), replace_spc(), sd_outliers(), spStat(), sp_class_perform()

Examples

## Not run: 

read.sp.csv2("Spectra_ascii.txt")

# Read several files to one `hyperspec` object:

Files   <- dir()[1:4]                           # 4 files are selected
sp_list <- lapply(Files, read.sp.csv)  # Make a list of objects
sp      <- collapse(sp_list)                    # Merge several spectra to one object

plotmat(sp)

## End(Not run)

GegznaV/spHelper documentation built on April 16, 2023, 1:42 p.m.