prepareMiDAS_hla_aa: Prepare MiDAS data on HLA amino acid level

In Genentech/MiDAS: R package for immunogenomics data handling and association analysis

Prepare MiDAS data on HLA amino acid level

Description

Prepare MiDAS data on HLA amino acid level

Usage

prepareMiDAS_hla_aa(hla_calls, indels = TRUE, unkchar = FALSE, ...)

Arguments

hla_calls	HLA calls data frame, as returned by readHlaCalls function.
indels	Logical indicating whether indels should be considered when checking variability.
unkchar	Logical indicating whether unknown characters in the alignment should be considered when checking variability.
...	Not used

Value

SummarizedExperiment

Genentech/MiDAS documentation built on Feb. 5, 2024, 11:52 a.m.