prepareMiDAS_hla_divergence: Prepare MiDAS data on HLA divergence level

In Genentech/MiDAS: R package for immunogenomics data handling and association analysis

Prepare MiDAS data on HLA divergence level

Description

Prepare MiDAS data on HLA divergence level

Usage

prepareMiDAS_hla_divergence(
  hla_calls,
  hla_divergence_aa_selection = "binding_groove",
  ...
)

Arguments

hla_calls	HLA calls data frame, as returned by readHlaCalls function.
hla_divergence_aa_selection	String specifying variable region in peptide binding groove which should be considered for Grantham distance calculation. Valid choices includes: "binding_groove", "B_pocket", "F_pocket". See details for more information.
...	Not used

Value

Matrix

Genentech/MiDAS documentation built on Feb. 5, 2024, 11:52 a.m.