Files in GianlucaMattei/methyl.O
Annotate, Score and Visualize Differentially Methylated Regions
DESCRIPTION
LICENSE
Meta/vignette.rds
NAMESPACE
R/annotateDMRs.R
R/annotateEnhancers.R
R/annotatedDMRs2Enrichr.R
R/annotatedDMRs2Exprs.R
R/annotatedEnh2Exprs.R
R/associateTFs2Exprs.R
R/formatDMRsInput.R
R/genesToNCG.R
R/plotDMRs.R
R/plotDMRs2Enrichr.R
R/plotMethylationOverview.R
R/plotTFs2Exprs.R
R/queryDatabase.R
R/runOnDesktop.R
R/scoreAnnotatedDMRs.R
R/tfs2Enrichr.R
README.md
data/AllTrack_for_Gviz_Ensdb75.RDS
data/AllTrack_for_Gviz_Ensdb86.RDS
data/CGIs.19.comsic.positions.gr.RDS
data/CGIs.19.cosmic.gr.RDS
data/CGIs.19.gr.RDS
data/CGIs.38.comsic.positions.gr.RDS
data/CGIs.38.cosmic.gr.RDS
data/CGIs.38.gr.RDS
data/CpG.19.comsic.positions.gr.RDS
data/CpG.19.cosmic.gr.RDS
data/CpG.19.gr.RDS
data/CpG.38.comsic.positions.gr.RDS
data/CpG.38.cosmic.gr.RDS
data/CpG.38.gr.RDS
data/DB.COSMIC.RDS
data/DB.DGV.hg19.RDS
data/DB.DGV.hg38.RDS
data/DB.NCG.hg19.RDS
data/DB.dbVar.benign.hg19.RDS
data/DB.dbVar.benign.hg38.RDS
data/DB.dbVar.pathogenic.hg19.RDS
data/DB.dbVar.pathogenic.hg38.RDS
data/DB.dbVar.somatic.hg19.RDS
data/DB.dbVar.somatic.hg38.RDS
data/DB.gnomad.hg19.RDS
data/DB.gnomad.hg38.RDS
data/DMRsSubset.csv
data/ENCODE_targets.RDS
data/db.exons_ENSEMBL_hg19.RDS
data/db.exons_ENSEMBL_hg38.RDS
data/db.exons_UCSC_hg19.RDS
data/db.exons_UCSC_hg38.RDS
data/enhancerExample.RDS
data/enrichrExample.RDS
data/exampleAnnoTable.RDS
data/exampleInputTable.RDS
data/expression.sampled.RDS
data/expressionSubset.csv
data/five.utrs_ENSEMBL_hg19.RDS
data/five.utrs_ENSEMBL_hg38.RDS
data/five.utrs_UCSC_hg19.RDS
data/five.utrs_UCSC_hg38.RDS
data/hacer.all.enhancer.hg19.gr.RDS
data/hacer.all.enhancer.hg38.gr.RDS
data/intronsRankedAll_ENSEMBL_hg19.RDS
data/intronsRankedAll_ENSEMBL_hg38.RDS
data/intronsRankedAll_UCSC_hg19.RDS
data/intronsRankedAll_UCSC_hg38.RDS
data/logo6.png
data/methyloMap.png
data/pathsToGene_NCG.tsv
data/promSelectedAll_ENSEMBL_hg19.RDS
data/promSelectedAll_ENSEMBL_hg38.RDS
data/promSelectedAll_UCSC_hg19.RDS
data/three.utrs_ENSEMBL_hg19.RDS
data/three.utrs_ENSEMBL_hg38.RDS
data/three.utrs_UCSC_hg19.RDS
data/three.utrs_UCSC_hg38.RDS
data/txsSelectedAll_ENSEMBL_hg19.RDS
data/txsSelectedAll_ENSEMBL_hg38.RDS
data/txsSelectedAll_UCSC_hg19.RDS
data/txsSelectedAll_UCSC_hg38.RDS
data/txsSelectedLongest_ENSEMBL_hg19.RDS
data/txsSelectedLongest_ENSEMBL_hg38.RDS
data/txsSelectedLongest_UCSC_hg19.RDS
data/txsSelectedLongest_UCSC_hg38.RDS
doc/methyl.O_1.0.0.pdf
doc/vignette.R
doc/vignette.Rmd
doc/vignette.html
man/annotateDMRs.Rd
man/annotateEnhancers.Rd
man/annotatedDMRs2Enrichr.Rd
man/annotatedDMRs2Exprs.Rd
man/annotatedEnh2Exprs.Rd
man/associateTFs2Exprs.Rd
man/formatDMRsInput.Rd
man/genesToNCG.Rd
man/plotDMRs.Rd
man/plotDMRs2Enrichr.Rd
man/plotMethylationOverview.Rd
man/plotTFs2Exprs.Rd
man/queryDatabase.Rd
man/runOnDesktop.Rd
man/scoreAnnotatedDMRs.Rd
man/tfs2Enrichr.Rd
vignettes/EnrichrTFsPlot.pdf
vignettes/EnrichrTFsPlot.png
vignettes/MethylationVsExpression.pdf
vignettes/MethylationVsExpression.png
vignettes/genemodels.pdf
vignettes/genemodels.png
vignettes/githubReadme.Rmd
vignettes/logo6.png
vignettes/methyloMap.png
vignettes/vignette.Rmd
vignettes/visualizeMethylation.png
