queryDatabase: Query database to find pathologic genes.

In GianlucaMattei/methyl.O: Annotate, Score and Visualize Differentially Methylated Regions

Query database to find pathologic genes.

Description

Query elements of resulting annotations list to specified database in order to find pathogenic genes.

Usage

queryDatabase(
  DMRsRanges,
  db,
  return.table = TRUE,
  hold.columns,
  is.genomic.ranges = FALSE,
  thr = 0
)

Arguments

DMRsRanges	DMRs ranges
db	character, database to query
return.table	logical, optition to return a table instead a vector of presence. Default = TRUE
hold.columns	numeric vectors, column positions to hold when return.table=TRUE
is.genomic.ranges	logical, specifies if database is a GenomicRange objet or a data.frame. Default = FALSE
thr	numeric, threshold for beta difference values. Default = 0

Value

a vector of presence or a data.frame

GianlucaMattei/methyl.O documentation built on Sept. 12, 2023, 11:53 p.m.