formatDMRsInput: Convert input table to proper format.

In GianlucaMattei/methyl.O: Annotate, Score and Visualize Differentially Methylated Regions

Convert input table to proper format.

Description

Convert input table to proper format. The firts three column of the input table must have chr, start, end coordinates.

Usage

formatDMRsInput(
  tableIn,
  thr.beta,
  col.betadiff = 4,
  col.beta1 = NULL,
  col.beta2 = NULL
)

Arguments

thr.beta	numeric, beta difference threshold to consider methylations. Default = 0.3
col.betadiff	numeric, column position for beta diff. in input table. Default = 4
col.beta1	numeric, column position for first sample beta values in input table
col.beta2	numeric, column position for second sample beta values in input table
DMRsRanges	the DMRs ranges, it must have the following columns: chr, start, end, beta diff. Other columns will be stored in the resulting output under the column other.

Value

data.frame of DMR ranges

GianlucaMattei/methyl.O documentation built on Sept. 12, 2023, 11:53 p.m.