Man pages for GianlucaMattei/methyl.O
Annotate, Score and Visualize Differentially Methylated Regions
| annotatedDMRs2Enrichr | Query different databases to find enriched proceses. |
| annotatedDMRs2Exprs | Compute correlation between expression and methylation... |
| annotatedEnh2Exprs | Compute expression methylation correlation |
| annotateDMRs | Annotates the the differentially methylated regions. |
| annotateEnhancers | Query database to find enhancer. |
| associateTFs2Exprs | Associate target genes to TFs and retrieve their expression |
| formatDMRsInput | Convert input table to proper format. |
| genesToNCG | Find genes annotated in NCG. |
| plotDMRs | Converts annotated DMRs in a plot |
| plotDMRs2Enrichr | Plot EnrichR Results |
| plotMethylationOverview | Plot a simple distribution of methylations. |
| plotTFs2Exprs | Plot the beta value of TF and related target genes expression |
| queryDatabase | Query database to find pathologic genes. |
| runOnDesktop | Start Graphical User Interface |
| scoreAnnotatedDMRs | Score the annotated methylation segments. |
| tfs2Enrichr | Query different databases to find enriched proceses. |
