getEmbedding: Get embedding information stored in an ArchRProject

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Get embedding information stored in an ArchRProject

Description

This function gets an embedding (i.e. UMAP) from a given ArchRProject.

Usage

getEmbedding(ArchRProj = NULL, embedding = "UMAP", returnDF = TRUE)

Arguments

ArchRProj	An ArchRProject object.
embedding	The name of the embeddings object (i.e. UMAP, TSNE see embeddingOut of the addEmbeddings() function) to retrieve from the designated ArchRProject.
returnDF	A boolean value indicating whether to return the embedding object as a data.frame. Otherwise, it will return the full embedding object.

GreenleafLab/ArchR documentation built on Feb. 28, 2024, 4:17 p.m.