getGenes: Get the genes from an ArchRProject

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Get the genes from an ArchRProject

Description

This function gets the genes start and end coordinates as a GRanges object from the geneAnnotation of a given ArchRProject.

Usage

getGenes(ArchRProj = NULL, symbols = NULL)

Arguments

ArchRProj	An ArchRProject object.
symbols	A character vector containing the gene symbols to subset from the geneAnnotation.

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Get Genes in ArchRProj
getGenes(proj)

# Get Genes globally
getGenes()

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.